To reliably kill processes spawned by a job during a build, Hudson contains a bit of native code to list up such processes and kill them. This is tested on several platforms and architectures, but if you find a show-stopper problem because of this, you can disable this feature by setting a Java property named "hudson.util.ProcessTreeKiller.disable" to the value "true".
This can be done as a parameter to the "java" binary when starting Hudson:
Depending on how you run your container, this can be different. In the distributed build environment, this system property needs to be set on slave JVMs.
The ProcessTreeKiller takes advantage of the fact that by default a new process gets a copy of the environment variables of its spawning/creating process.
It sets a specific environment variable in the process executing the build job. Later, when the user requests to stop the build job's process it gets a list of all processes running on the computer and their environment variables, and looks for the environment variable that it initially set for the build job's process.
Every job with that environment variable in its environment is then terminated.
A convenient way to achieve that is to change the environment variable BUILD_ID which Hudson's ProcessTreeKiller is looking for. This will cause Hudson to assume that your daemon is not spawned by the Hudson build. For example: